Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC21.31■■□□□ 1
ShhQ62226 Gm4799-201ENSMUST00000095396 657 ntBASIC21.31■■□□□ 1
ShhQ62226 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ShhQ62226 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
ShhQ62226 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC21.31■■□□□ 1
ShhQ62226 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC21.3■■□□□ 1
ShhQ62226 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC21.3■■□□□ 1
ShhQ62226 Gm27040-201ENSMUST00000181984 504 ntTSL 2 BASIC21.3■■□□□ 1
ShhQ62226 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC21.3■■□□□ 1
ShhQ62226 Erf-202ENSMUST00000116343 690 ntAPPRIS ALT2 TSL 2 BASIC21.29■■□□□ 1
ShhQ62226 Gm16437-201ENSMUST00000025669 507 ntBASIC21.29■■□□□ 1
ShhQ62226 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
ShhQ62226 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
ShhQ62226 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
ShhQ62226 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
ShhQ62226 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC21.28■■□□□ 1
ShhQ62226 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC21.28■■□□□ 1
ShhQ62226 Gm7332-201ENSMUST00000118351 454 ntBASIC21.28■■□□□ 1
ShhQ62226 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC21.27■■□□□ 1
ShhQ62226 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC21.27■■□□□ 1
ShhQ62226 Pxmp2-201ENSMUST00000031472 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
ShhQ62226 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC21.27■■□□□ 1
ShhQ62226 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
ShhQ62226 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
ShhQ62226 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC21.26■□□□□ 0.99
ShhQ62226 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
ShhQ62226 Gpr25-201ENSMUST00000086395 1077 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
ShhQ62226 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
ShhQ62226 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
ShhQ62226 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ShhQ62226 Gm45713-201ENSMUST00000209467 1477 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
ShhQ62226 AC122428.3-201ENSMUST00000215551 2290 ntBASIC21.24■□□□□ 0.99
ShhQ62226 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
ShhQ62226 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC21.23■□□□□ 0.99
ShhQ62226 Pmvk-201ENSMUST00000029564 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
ShhQ62226 Gm22567-201ENSMUST00000175542 342 ntBASIC21.22■□□□□ 0.99
ShhQ62226 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC21.22■□□□□ 0.99
ShhQ62226 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ShhQ62226 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ShhQ62226 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC21.21■□□□□ 0.99
ShhQ62226 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
ShhQ62226 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC21.2■□□□□ 0.99
ShhQ62226 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
ShhQ62226 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
ShhQ62226 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
ShhQ62226 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
ShhQ62226 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC21.19■□□□□ 0.98
ShhQ62226 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC21.19■□□□□ 0.98
ShhQ62226 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
ShhQ62226 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC21.18■□□□□ 0.98
ShhQ62226 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
ShhQ62226 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
ShhQ62226 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
ShhQ62226 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC21.17■□□□□ 0.98
ShhQ62226 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ShhQ62226 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
ShhQ62226 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ShhQ62226 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ShhQ62226 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ShhQ62226 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC21.16■□□□□ 0.98
ShhQ62226 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
ShhQ62226 Pkd1-207ENSMUST00000228550 1050 ntBASIC21.16■□□□□ 0.98
ShhQ62226 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC21.16■□□□□ 0.98
ShhQ62226 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ShhQ62226 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
ShhQ62226 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC21.14■□□□□ 0.97
ShhQ62226 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
ShhQ62226 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
ShhQ62226 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
ShhQ62226 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
ShhQ62226 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ShhQ62226 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ShhQ62226 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
ShhQ62226 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
ShhQ62226 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
ShhQ62226 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC21.12■□□□□ 0.97
ShhQ62226 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
ShhQ62226 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
ShhQ62226 Gm27502-201ENSMUST00000183495 199 ntBASIC21.11■□□□□ 0.97
ShhQ62226 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
ShhQ62226 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC21.1■□□□□ 0.97
ShhQ62226 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
ShhQ62226 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ShhQ62226 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
ShhQ62226 Gm37847-201ENSMUST00000192163 1497 ntBASIC21.09■□□□□ 0.97
ShhQ62226 Gm31748-201ENSMUST00000194938 1497 ntBASIC21.09■□□□□ 0.97
ShhQ62226 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
ShhQ62226 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
ShhQ62226 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
ShhQ62226 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ShhQ62226 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC21.07■□□□□ 0.96
ShhQ62226 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
ShhQ62226 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
ShhQ62226 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ShhQ62226 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ShhQ62226 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
ShhQ62226 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
ShhQ62226 AC154454.1-201ENSMUST00000225253 216 ntBASIC21.06■□□□□ 0.96
ShhQ62226 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
ShhQ62226 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 1568.7 ms