Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Nkx3-1P97436 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Nkx3-1P97436 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Nkx3-1P97436 Gm14523-201ENSMUST00000117260 558 ntBASIC20.01■□□□□ 0.79
Nkx3-1P97436 Kdm2a-203ENSMUST00000116571 2413 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Nkx3-1P97436 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Nkx3-1P97436 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Nkx3-1P97436 Runx2os1-201ENSMUST00000097320 792 ntTSL 1 (best) BASIC20■□□□□ 0.79
Nkx3-1P97436 Det1-201ENSMUST00000032839 2269 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Nkx3-1P97436 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Nkx3-1P97436 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Nkx3-1P97436 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Nkx3-1P97436 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Nkx3-1P97436 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Nkx3-1P97436 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Nkx3-1P97436 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Nkx3-1P97436 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC19.97■□□□□ 0.79
Nkx3-1P97436 Slc39a13-203ENSMUST00000111436 1291 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Nkx3-1P97436 Sike1-202ENSMUST00000119450 774 ntTSL 3 BASIC19.96■□□□□ 0.79
Nkx3-1P97436 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC19.96■□□□□ 0.79
Nkx3-1P97436 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Nkx3-1P97436 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
Nkx3-1P97436 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Nkx3-1P97436 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
Nkx3-1P97436 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Nkx3-1P97436 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Nkx3-1P97436 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Nkx3-1P97436 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Nkx3-1P97436 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Nkx3-1P97436 Gm37847-201ENSMUST00000192163 1497 ntBASIC19.93■□□□□ 0.78
Nkx3-1P97436 Gm31748-201ENSMUST00000194938 1497 ntBASIC19.93■□□□□ 0.78
Nkx3-1P97436 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Nkx3-1P97436 Dleu2-204ENSMUST00000182286 666 ntTSL 2 BASIC19.93■□□□□ 0.78
Nkx3-1P97436 Dleu2-213ENSMUST00000183245 637 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Nkx3-1P97436 A830092H15Rik-201ENSMUST00000099182 1229 ntBASIC19.93■□□□□ 0.78
Nkx3-1P97436 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Nkx3-1P97436 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Nkx3-1P97436 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Nkx3-1P97436 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Nkx3-1P97436 Wbp1-208ENSMUST00000151393 837 ntTSL 3 BASIC19.91■□□□□ 0.78
Nkx3-1P97436 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Nkx3-1P97436 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC19.91■□□□□ 0.78
Nkx3-1P97436 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Nkx3-1P97436 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Nkx3-1P97436 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Nkx3-1P97436 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC19.9■□□□□ 0.78
Nkx3-1P97436 AC151971.4-201ENSMUST00000214717 704 ntBASIC19.9■□□□□ 0.78
Nkx3-1P97436 AC153911.1-201ENSMUST00000220378 758 ntBASIC19.9■□□□□ 0.78
Nkx3-1P97436 Gm14121-201ENSMUST00000121441 1380 ntBASIC19.9■□□□□ 0.78
Nkx3-1P97436 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Nkx3-1P97436 Terc-201ENSMUST00000082862 423 ntBASIC19.89■□□□□ 0.77
Nkx3-1P97436 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC19.88■□□□□ 0.77
Nkx3-1P97436 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Nkx3-1P97436 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC19.88■□□□□ 0.77
Nkx3-1P97436 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Nkx3-1P97436 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Nkx3-1P97436 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
Nkx3-1P97436 Gm5067-201ENSMUST00000170449 1009 ntBASIC19.87■□□□□ 0.77
Nkx3-1P97436 Ssx2ip-202ENSMUST00000106149 2416 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Nkx3-1P97436 Qdpr-201ENSMUST00000015950 1380 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Nkx3-1P97436 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC19.86■□□□□ 0.77
Nkx3-1P97436 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Nkx3-1P97436 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Nkx3-1P97436 Psmb8-201ENSMUST00000025196 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Nkx3-1P97436 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Nkx3-1P97436 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Nkx3-1P97436 Srsf2-206ENSMUST00000190993 1326 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
Nkx3-1P97436 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC19.84■□□□□ 0.77
Nkx3-1P97436 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Nkx3-1P97436 Gm39157-201ENSMUST00000212322 1180 ntTSL 5 BASIC19.84■□□□□ 0.77
Nkx3-1P97436 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Nkx3-1P97436 Inafm1-201ENSMUST00000169612 1605 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
Nkx3-1P97436 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Nkx3-1P97436 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
Nkx3-1P97436 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
Nkx3-1P97436 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Nkx3-1P97436 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC19.83■□□□□ 0.76
Nkx3-1P97436 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Nkx3-1P97436 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
Nkx3-1P97436 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Nkx3-1P97436 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Nkx3-1P97436 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
Nkx3-1P97436 Gsk3a-202ENSMUST00000108411 2248 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Nkx3-1P97436 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Nkx3-1P97436 Gm10420-201ENSMUST00000121713 882 ntBASIC19.81■□□□□ 0.76
Nkx3-1P97436 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC19.81■□□□□ 0.76
Nkx3-1P97436 Anxa5-201ENSMUST00000029266 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Nkx3-1P97436 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Nkx3-1P97436 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Nkx3-1P97436 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Nkx3-1P97436 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Nkx3-1P97436 Uncx-201ENSMUST00000172997 2498 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Nkx3-1P97436 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC19.79■□□□□ 0.76
Nkx3-1P97436 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Nkx3-1P97436 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Nkx3-1P97436 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Nkx3-1P97436 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Nkx3-1P97436 Amer2-203ENSMUST00000225247 2662 ntBASIC19.79■□□□□ 0.76
Nkx3-1P97436 Fezf2-202ENSMUST00000224023 1917 ntBASIC19.78■□□□□ 0.76
Nkx3-1P97436 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 76,532 protein–RNA pairs in 10.2 ms