Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC18.82■□□□□ 0.6
PRKDCP78527 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
PRKDCP78527 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
PRKDCP78527 SDCCAG3-202ENST00000357365 2304 ntAPPRIS P4 TSL 5 BASIC18.81■□□□□ 0.6
PRKDCP78527 PEMT-206ENST00000435340 960 ntTSL 5 BASIC18.81■□□□□ 0.6
PRKDCP78527 AC103724.3-201ENST00000564481 992 ntBASIC18.81■□□□□ 0.6
PRKDCP78527 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
PRKDCP78527 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC18.8■□□□□ 0.6
PRKDCP78527 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
PRKDCP78527 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
PRKDCP78527 SMPD5-203ENST00000639008 1464 ntBASIC18.8■□□□□ 0.6
PRKDCP78527 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
PRKDCP78527 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC18.79■□□□□ 0.6
PRKDCP78527 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
PRKDCP78527 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC18.79■□□□□ 0.6
PRKDCP78527 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PRKDCP78527 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
PRKDCP78527 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PRKDCP78527 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC18.78■□□□□ 0.6
PRKDCP78527 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
PRKDCP78527 PVT1_1.1-201ENST00000615125 194 ntBASIC18.78■□□□□ 0.6
PRKDCP78527 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC18.78■□□□□ 0.6
PRKDCP78527 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PRKDCP78527 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
PRKDCP78527 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC18.78■□□□□ 0.6
PRKDCP78527 AC110285.7-201ENST00000624417 1536 ntBASIC18.78■□□□□ 0.6
PRKDCP78527 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
PRKDCP78527 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC18.77■□□□□ 0.6
PRKDCP78527 AC008406.3-201ENST00000620001 1374 ntBASIC18.77■□□□□ 0.6
PRKDCP78527 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
PRKDCP78527 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
PRKDCP78527 FAM173A-202ENST00000564000 1088 ntAPPRIS ALT2 TSL 2 BASIC18.77■□□□□ 0.6
PRKDCP78527 AC026202.3-201ENST00000600805 1127 ntBASIC18.77■□□□□ 0.6
PRKDCP78527 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
PRKDCP78527 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC18.76■□□□□ 0.59
PRKDCP78527 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC18.76■□□□□ 0.59
PRKDCP78527 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PRKDCP78527 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
PRKDCP78527 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PRKDCP78527 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC18.76■□□□□ 0.59
PRKDCP78527 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
PRKDCP78527 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PRKDCP78527 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
PRKDCP78527 PRTG-204ENST00000561292 833 ntTSL 3 BASIC18.76■□□□□ 0.59
PRKDCP78527 BHLHE23-202ENST00000612929 1109 ntBASIC18.76■□□□□ 0.59
PRKDCP78527 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PRKDCP78527 MIR4508-201ENST00000584178 70 ntBASIC18.75■□□□□ 0.59
PRKDCP78527 RAP2CP1-202ENST00000605179 643 ntBASIC18.75■□□□□ 0.59
PRKDCP78527 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC18.75■□□□□ 0.59
PRKDCP78527 AC135983.2-203ENST00000454486 1613 ntBASIC18.75■□□□□ 0.59
PRKDCP78527 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
PRKDCP78527 MIR6765-201ENST00000614092 87 ntBASIC18.74■□□□□ 0.59
PRKDCP78527 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC18.74■□□□□ 0.59
PRKDCP78527 RALB-208ENST00000631312 311 ntTSL 5 BASIC18.74■□□□□ 0.59
PRKDCP78527 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC18.74■□□□□ 0.59
PRKDCP78527 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
PRKDCP78527 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
PRKDCP78527 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC18.74■□□□□ 0.59
PRKDCP78527 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
PRKDCP78527 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
PRKDCP78527 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
PRKDCP78527 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
PRKDCP78527 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC18.73■□□□□ 0.59
PRKDCP78527 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
PRKDCP78527 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC18.73■□□□□ 0.59
PRKDCP78527 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
PRKDCP78527 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PRKDCP78527 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PRKDCP78527 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
PRKDCP78527 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PRKDCP78527 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PRKDCP78527 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PRKDCP78527 AC239859.2-201ENST00000444165 318 ntBASIC18.71■□□□□ 0.59
PRKDCP78527 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
PRKDCP78527 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PRKDCP78527 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PRKDCP78527 AC139795.1-202ENST00000500444 432 ntBASIC18.71■□□□□ 0.59
PRKDCP78527 PEX7-203ENST00000541292 945 ntTSL 5 BASIC18.71■□□□□ 0.59
PRKDCP78527 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC18.71■□□□□ 0.58
PRKDCP78527 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PRKDCP78527 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
PRKDCP78527 REST-210ENST00000638187 1334 ntTSL 5 BASIC18.69■□□□□ 0.58
PRKDCP78527 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
PRKDCP78527 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PRKDCP78527 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PRKDCP78527 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC18.68■□□□□ 0.58
PRKDCP78527 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
PRKDCP78527 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC18.68■□□□□ 0.58
PRKDCP78527 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC18.68■□□□□ 0.58
PRKDCP78527 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PRKDCP78527 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
PRKDCP78527 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
PRKDCP78527 AC074183.2-201ENST00000623112 922 ntBASIC18.68■□□□□ 0.58
PRKDCP78527 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
PRKDCP78527 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC18.67■□□□□ 0.58
PRKDCP78527 AL031848.2-201ENST00000607670 837 ntBASIC18.67■□□□□ 0.58
PRKDCP78527 AC092666.2-201ENST00000613287 246 ntBASIC18.67■□□□□ 0.58
PRKDCP78527 RARRES2P6-201ENST00000567333 442 ntBASIC18.67■□□□□ 0.58
PRKDCP78527 AC126177.7-201ENST00000547904 679 ntBASIC18.66■□□□□ 0.58
PRKDCP78527 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms