Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.99■■□□□ 1.11
SOX2P48431 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SOX2P48431 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SOX2P48431 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SOX2P48431 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
SOX2P48431 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
SOX2P48431 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
SOX2P48431 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
SOX2P48431 GFRA4-202ENST00000319242 900 ntAPPRIS P4 TSL 1 (best) BASIC21.98■■□□□ 1.11
SOX2P48431 MZT2B-202ENST00000409255 769 ntAPPRIS ALT2 TSL 5 BASIC21.98■■□□□ 1.11
SOX2P48431 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
SOX2P48431 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC21.98■■□□□ 1.11
SOX2P48431 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
SOX2P48431 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
SOX2P48431 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SOX2P48431 HIST2H3C-201ENST00000369158 1656 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
SOX2P48431 HIST2H3A-201ENST00000403683 1656 ntAPPRIS P1 BASIC21.98■■□□□ 1.11
SOX2P48431 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
SOX2P48431 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC21.97■■□□□ 1.11
SOX2P48431 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SOX2P48431 AC135983.2-203ENST00000454486 1613 ntBASIC21.96■■□□□ 1.11
SOX2P48431 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC21.96■■□□□ 1.11
SOX2P48431 CHML-205ENST00000638160 705 ntTSL 3 BASIC21.96■■□□□ 1.11
SOX2P48431 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SOX2P48431 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
SOX2P48431 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SOX2P48431 AC018358.1-201ENST00000631079 1402 ntBASIC21.96■■□□□ 1.11
SOX2P48431 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC21.95■■□□□ 1.11
SOX2P48431 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SOX2P48431 AC091060.1-201ENST00000623524 1766 ntBASIC21.94■■□□□ 1.1
SOX2P48431 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SOX2P48431 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SOX2P48431 WHAMMP2-203ENST00000563942 1603 ntBASIC21.94■■□□□ 1.1
SOX2P48431 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
SOX2P48431 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SOX2P48431 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC21.93■■□□□ 1.1
SOX2P48431 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC21.93■■□□□ 1.1
SOX2P48431 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC21.93■■□□□ 1.1
SOX2P48431 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC21.93■■□□□ 1.1
SOX2P48431 RCC1L-205ENST00000618035 1409 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SOX2P48431 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
SOX2P48431 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SOX2P48431 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SOX2P48431 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SOX2P48431 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SOX2P48431 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
SOX2P48431 INAFM1-201ENST00000552360 1255 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
SOX2P48431 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SOX2P48431 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SOX2P48431 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC21.91■■□□□ 1.1
SOX2P48431 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SOX2P48431 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
SOX2P48431 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
SOX2P48431 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC21.9■■□□□ 1.1
SOX2P48431 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
SOX2P48431 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
SOX2P48431 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC21.89■■□□□ 1.09
SOX2P48431 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC21.89■■□□□ 1.09
SOX2P48431 AC005559.1-201ENST00000589661 871 ntBASIC21.89■■□□□ 1.09
SOX2P48431 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC21.89■■□□□ 1.09
SOX2P48431 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
SOX2P48431 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC21.89■■□□□ 1.09
SOX2P48431 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SOX2P48431 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
SOX2P48431 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC21.88■■□□□ 1.09
SOX2P48431 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC21.88■■□□□ 1.09
SOX2P48431 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC21.87■■□□□ 1.09
SOX2P48431 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.87■■□□□ 1.09
SOX2P48431 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC21.87■■□□□ 1.09
SOX2P48431 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC21.87■■□□□ 1.09
SOX2P48431 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC21.87■■□□□ 1.09
SOX2P48431 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
SOX2P48431 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
SOX2P48431 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC21.86■■□□□ 1.09
SOX2P48431 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
SOX2P48431 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
SOX2P48431 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SOX2P48431 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
SOX2P48431 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
SOX2P48431 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC21.85■■□□□ 1.09
SOX2P48431 EI24-212ENST00000615917 1407 ntTSL 2 BASIC21.84■■□□□ 1.09
SOX2P48431 AC108673.1-201ENST00000510422 1159 ntBASIC21.84■■□□□ 1.09
SOX2P48431 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
SOX2P48431 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC21.84■■□□□ 1.09
SOX2P48431 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
SOX2P48431 ARTN-204ENST00000438616 889 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SOX2P48431 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC21.82■■□□□ 1.08
SOX2P48431 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
SOX2P48431 MIR6090-201ENST00000622481 60 ntBASIC21.82■■□□□ 1.08
SOX2P48431 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
SOX2P48431 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
SOX2P48431 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC21.82■■□□□ 1.08
SOX2P48431 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.82■■□□□ 1.08
SOX2P48431 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC21.82■■□□□ 1.08
SOX2P48431 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
SOX2P48431 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
SOX2P48431 SUZ12P1-203ENST00000578195 985 ntBASIC21.81■■□□□ 1.08
SOX2P48431 CDC16-211ENST00000628084 2058 ntTSL 5 BASIC21.81■■□□□ 1.08
SOX2P48431 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
SOX2P48431 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms