Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.2■□□□□ 0.82
CDX1P47902 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CDX1P47902 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CDX1P47902 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
CDX1P47902 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDX1P47902 MAZ-202ENST00000322945 2532 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
CDX1P47902 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC20.2■□□□□ 0.82
CDX1P47902 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
CDX1P47902 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC20.2■□□□□ 0.82
CDX1P47902 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDX1P47902 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.19■□□□□ 0.82
CDX1P47902 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
CDX1P47902 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDX1P47902 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
CDX1P47902 MACF1-219ENST00000484793 834 ntTSL 2 BASIC20.19■□□□□ 0.82
CDX1P47902 CALM3-209ENST00000597743 577 ntTSL 4 BASIC20.19■□□□□ 0.82
CDX1P47902 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
CDX1P47902 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CDX1P47902 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
CDX1P47902 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
CDX1P47902 AGPS-202ENST00000409888 815 ntTSL 4 BASIC20.18■□□□□ 0.82
CDX1P47902 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC20.18■□□□□ 0.82
CDX1P47902 DUX4L11-201ENST00000611504 1267 ntBASIC20.18■□□□□ 0.82
CDX1P47902 DUX4L12-201ENST00000614593 1267 ntBASIC20.18■□□□□ 0.82
CDX1P47902 DUX4L14-201ENST00000621227 1267 ntBASIC20.18■□□□□ 0.82
CDX1P47902 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC20.18■□□□□ 0.82
CDX1P47902 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
CDX1P47902 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC20.18■□□□□ 0.82
CDX1P47902 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC20.17■□□□□ 0.82
CDX1P47902 AL449106.1-201ENST00000608517 1980 ntBASIC20.17■□□□□ 0.82
CDX1P47902 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDX1P47902 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CDX1P47902 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC20.17■□□□□ 0.82
CDX1P47902 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CDX1P47902 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDX1P47902 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CDX1P47902 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDX1P47902 ST7-AS1-201ENST00000456775 1889 ntBASIC20.16■□□□□ 0.82
CDX1P47902 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDX1P47902 HLA-V-202ENST00000446817 847 ntBASIC20.16■□□□□ 0.82
CDX1P47902 RNF166-209ENST00000567844 633 ntTSL 5 BASIC20.16■□□□□ 0.82
CDX1P47902 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC20.16■□□□□ 0.82
CDX1P47902 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CDX1P47902 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CDX1P47902 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDX1P47902 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC20.15■□□□□ 0.82
CDX1P47902 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC20.15■□□□□ 0.82
CDX1P47902 LINC00273-201ENST00000539813 1452 ntBASIC20.15■□□□□ 0.82
CDX1P47902 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC20.15■□□□□ 0.82
CDX1P47902 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC20.15■□□□□ 0.82
CDX1P47902 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDX1P47902 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CDX1P47902 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CDX1P47902 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDX1P47902 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CDX1P47902 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CDX1P47902 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
CDX1P47902 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CDX1P47902 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC20.13■□□□□ 0.81
CDX1P47902 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC20.13■□□□□ 0.81
CDX1P47902 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDX1P47902 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDX1P47902 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC20.13■□□□□ 0.81
CDX1P47902 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC20.13■□□□□ 0.81
CDX1P47902 MBP-237ENST00000579129 1052 ntTSL 5 BASIC20.13■□□□□ 0.81
CDX1P47902 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CDX1P47902 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDX1P47902 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CDX1P47902 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CDX1P47902 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDX1P47902 MIR3648-2-201ENST00000581792 180 ntBASIC20.12■□□□□ 0.81
CDX1P47902 MIR3648-1-201ENST00000615959 180 ntBASIC20.12■□□□□ 0.81
CDX1P47902 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CDX1P47902 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CDX1P47902 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDX1P47902 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDX1P47902 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CDX1P47902 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC20.1■□□□□ 0.81
CDX1P47902 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CDX1P47902 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CDX1P47902 GDI1-215ENST00000630693 786 ntTSL 4 BASIC20.1■□□□□ 0.81
CDX1P47902 AC127502.1-201ENST00000399971 1502 ntBASIC20.1■□□□□ 0.81
CDX1P47902 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC20.1■□□□□ 0.81
CDX1P47902 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CDX1P47902 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
CDX1P47902 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
CDX1P47902 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CDX1P47902 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC20.09■□□□□ 0.81
CDX1P47902 DUX4L13-201ENST00000554103 1267 ntBASIC20.09■□□□□ 0.81
CDX1P47902 DUX4L15-201ENST00000611059 1267 ntBASIC20.09■□□□□ 0.81
CDX1P47902 DUX4L23-201ENST00000615195 1269 ntBASIC20.09■□□□□ 0.81
CDX1P47902 DUX4L24-201ENST00000617576 1269 ntBASIC20.09■□□□□ 0.81
CDX1P47902 DUX4L22-201ENST00000618238 1269 ntBASIC20.09■□□□□ 0.81
CDX1P47902 DUX4L20-201ENST00000619712 1269 ntBASIC20.09■□□□□ 0.81
CDX1P47902 DUX4L21-201ENST00000622058 1269 ntBASIC20.09■□□□□ 0.81
CDX1P47902 DUX4L10-201ENST00000622460 1267 ntBASIC20.09■□□□□ 0.81
CDX1P47902 DUX4L25-201ENST00000624915 1269 ntBASIC20.09■□□□□ 0.81
CDX1P47902 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC20.08■□□□□ 0.81
CDX1P47902 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CDX1P47902 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms