Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Arhgap9-203ENSMUST00000219026 1946 ntAPPRIS P2 TSL 1 (best) BASIC25.82■■□□□ 1.72
Pcdha4O88689 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
Pcdha4O88689 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC25.82■■□□□ 1.72
Pcdha4O88689 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC25.82■■□□□ 1.72
Pcdha4O88689 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
Pcdha4O88689 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC25.8■■□□□ 1.72
Pcdha4O88689 Pkd1-207ENSMUST00000228550 1050 ntBASIC25.8■■□□□ 1.72
Pcdha4O88689 Gm9812-201ENSMUST00000061934 968 ntBASIC25.8■■□□□ 1.72
Pcdha4O88689 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
Pcdha4O88689 Nelfe-202ENSMUST00000165953 1381 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
Pcdha4O88689 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC25.79■■□□□ 1.72
Pcdha4O88689 Csrp1-201ENSMUST00000027677 1823 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Pcdha4O88689 Csrp1-202ENSMUST00000097561 1828 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
Pcdha4O88689 Paqr6-203ENSMUST00000147948 837 ntTSL 2 BASIC25.79■■□□□ 1.72
Pcdha4O88689 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
Pcdha4O88689 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Pcdha4O88689 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
Pcdha4O88689 Smagp-202ENSMUST00000172334 952 ntAPPRIS P1 TSL 2 BASIC25.78■■□□□ 1.72
Pcdha4O88689 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
Pcdha4O88689 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC25.77■■□□□ 1.72
Pcdha4O88689 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC25.77■■□□□ 1.72
Pcdha4O88689 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC25.76■■□□□ 1.71
Pcdha4O88689 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
Pcdha4O88689 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC25.76■■□□□ 1.71
Pcdha4O88689 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
Pcdha4O88689 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC25.75■■□□□ 1.71
Pcdha4O88689 Ltb4r1-201ENSMUST00000057569 1394 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
Pcdha4O88689 AC122317.2-201ENSMUST00000218708 1248 ntBASIC25.75■■□□□ 1.71
Pcdha4O88689 Ybx3-202ENSMUST00000087865 1684 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
Pcdha4O88689 Kif1c-205ENSMUST00000152618 1943 ntTSL 1 (best) BASIC25.74■■□□□ 1.71
Pcdha4O88689 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC25.74■■□□□ 1.71
Pcdha4O88689 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC25.73■■□□□ 1.71
Pcdha4O88689 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC25.73■■□□□ 1.71
Pcdha4O88689 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
Pcdha4O88689 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC25.72■■□□□ 1.71
Pcdha4O88689 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
Pcdha4O88689 Sdccag3-202ENSMUST00000077983 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC25.71■■□□□ 1.71
Pcdha4O88689 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC25.7■■□□□ 1.7
Pcdha4O88689 Tmem192-202ENSMUST00000079896 916 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
Pcdha4O88689 Ube2h-201ENSMUST00000094543 975 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
Pcdha4O88689 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
Pcdha4O88689 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Pcdha4O88689 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC25.69■■□□□ 1.7
Pcdha4O88689 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
Pcdha4O88689 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Pcdha4O88689 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Pcdha4O88689 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Pcdha4O88689 Dnajc19-202ENSMUST00000108195 659 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Pcdha4O88689 Dcun1d5-201ENSMUST00000034499 1122 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
Pcdha4O88689 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC25.68■■□□□ 1.7
Pcdha4O88689 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
Pcdha4O88689 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
Pcdha4O88689 AC153890.1-201ENSMUST00000220021 2469 ntBASIC25.67■■□□□ 1.7
Pcdha4O88689 AC153911.1-201ENSMUST00000220378 758 ntBASIC25.67■■□□□ 1.7
Pcdha4O88689 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC25.67■■□□□ 1.7
Pcdha4O88689 Tsen34-204ENSMUST00000108630 1779 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
Pcdha4O88689 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC25.66■■□□□ 1.7
Pcdha4O88689 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
Pcdha4O88689 Zfp91-201ENSMUST00000038627 5531 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Pcdha4O88689 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Pcdha4O88689 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Pcdha4O88689 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC25.65■■□□□ 1.7
Pcdha4O88689 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Pcdha4O88689 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
Pcdha4O88689 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
Pcdha4O88689 Gm10499-202ENSMUST00000174778 1698 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
Pcdha4O88689 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
Pcdha4O88689 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.7
Pcdha4O88689 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
Pcdha4O88689 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC25.64■■□□□ 1.69
Pcdha4O88689 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
Pcdha4O88689 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
Pcdha4O88689 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
Pcdha4O88689 Rpl38-203ENSMUST00000106599 457 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Pcdha4O88689 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
Pcdha4O88689 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
Pcdha4O88689 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
Pcdha4O88689 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Pcdha4O88689 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC25.62■■□□□ 1.69
Pcdha4O88689 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
Pcdha4O88689 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC25.61■■□□□ 1.69
Pcdha4O88689 Pard6a-203ENSMUST00000211888 1179 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
Pcdha4O88689 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
Pcdha4O88689 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
Pcdha4O88689 Scarna2-201ENSMUST00000157560 414 ntBASIC25.6■■□□□ 1.69
Pcdha4O88689 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
Pcdha4O88689 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC25.6■■□□□ 1.69
Pcdha4O88689 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Pcdha4O88689 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Pcdha4O88689 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC25.59■■□□□ 1.69
Pcdha4O88689 Gm11175-201ENSMUST00000116172 543 ntBASIC25.59■■□□□ 1.69
Pcdha4O88689 Card19-201ENSMUST00000048946 804 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Pcdha4O88689 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Pcdha4O88689 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC25.58■■□□□ 1.69
Pcdha4O88689 Gm9806-201ENSMUST00000051080 552 ntBASIC25.58■■□□□ 1.69
Pcdha4O88689 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Pcdha4O88689 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC25.57■■□□□ 1.68
Pcdha4O88689 Terc-201ENSMUST00000082862 423 ntBASIC25.57■■□□□ 1.68
Pcdha4O88689 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Pcdha4O88689 Arpc5l-202ENSMUST00000112862 1339 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
Retrieved 100 of 76,532 protein–RNA pairs in 96.8 ms