Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 AC151971.4-201ENSMUST00000214717 704 ntBASIC21.36■■□□□ 1.01
Col5a1O88207 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col5a1O88207 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col5a1O88207 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col5a1O88207 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col5a1O88207 Kcnmb4os2-203ENSMUST00000127070 1048 ntTSL 2 BASIC21.36■■□□□ 1.01
Col5a1O88207 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Col5a1O88207 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col5a1O88207 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Col5a1O88207 Gm15546-201ENSMUST00000122095 826 ntBASIC21.35■■□□□ 1.01
Col5a1O88207 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Col5a1O88207 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Col5a1O88207 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC21.34■■□□□ 1.01
Col5a1O88207 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
Col5a1O88207 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Col5a1O88207 Gm5522-201ENSMUST00000189483 1242 ntBASIC21.33■■□□□ 1.01
Col5a1O88207 Fezf2-202ENSMUST00000224023 1917 ntBASIC21.32■■□□□ 1
Col5a1O88207 Gm10420-201ENSMUST00000121713 882 ntBASIC21.32■■□□□ 1
Col5a1O88207 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC21.32■■□□□ 1
Col5a1O88207 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col5a1O88207 Txndc9-207ENSMUST00000195032 1444 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
Col5a1O88207 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Col5a1O88207 Gm13889-201ENSMUST00000099689 1386 ntBASIC21.31■■□□□ 1
Col5a1O88207 Gm12818-201ENSMUST00000117562 1349 ntBASIC21.31■■□□□ 1
Col5a1O88207 Gfra4-206ENSMUST00000110240 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
Col5a1O88207 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC21.31■■□□□ 1
Col5a1O88207 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
Col5a1O88207 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
Col5a1O88207 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Col5a1O88207 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Col5a1O88207 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC21.3■■□□□ 1
Col5a1O88207 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC21.3■■□□□ 1
Col5a1O88207 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Col5a1O88207 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
Col5a1O88207 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col5a1O88207 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Col5a1O88207 Map2k7-201ENSMUST00000003027 1626 ntTSL 1 (best) BASIC21.29■■□□□ 1
Col5a1O88207 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC21.29■■□□□ 1
Col5a1O88207 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC21.29■■□□□ 1
Col5a1O88207 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col5a1O88207 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
Col5a1O88207 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC21.28■■□□□ 1
Col5a1O88207 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC21.27■■□□□ 1
Col5a1O88207 Papola-211ENSMUST00000166735 1033 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
Col5a1O88207 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Col5a1O88207 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Col5a1O88207 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
Col5a1O88207 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC21.25■□□□□ 0.99
Col5a1O88207 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col5a1O88207 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
Col5a1O88207 Gm14121-201ENSMUST00000121441 1380 ntBASIC21.23■□□□□ 0.99
Col5a1O88207 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC21.22■□□□□ 0.99
Col5a1O88207 Ppp4c-201ENSMUST00000032936 1359 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col5a1O88207 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Col5a1O88207 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
Col5a1O88207 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC21.21■□□□□ 0.99
Col5a1O88207 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col5a1O88207 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC21.21■□□□□ 0.99
Col5a1O88207 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Col5a1O88207 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Col5a1O88207 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Col5a1O88207 AC093043.1-201ENSMUST00000226700 898 ntBASIC21.2■□□□□ 0.98
Col5a1O88207 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col5a1O88207 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Col5a1O88207 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col5a1O88207 Gm9910-201ENSMUST00000195385 1550 ntBASIC21.18■□□□□ 0.98
Col5a1O88207 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col5a1O88207 Nog-201ENSMUST00000061728 1695 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
Col5a1O88207 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Col5a1O88207 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col5a1O88207 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC21.17■□□□□ 0.98
Col5a1O88207 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Col5a1O88207 Aspscr1-203ENSMUST00000106158 1690 ntTSL 5 BASIC21.17■□□□□ 0.98
Col5a1O88207 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Col5a1O88207 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Col5a1O88207 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC21.16■□□□□ 0.98
Col5a1O88207 Gm9812-201ENSMUST00000061934 968 ntBASIC21.16■□□□□ 0.98
Col5a1O88207 Hacd1-202ENSMUST00000091429 871 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
Col5a1O88207 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC21.15■□□□□ 0.98
Col5a1O88207 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col5a1O88207 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Col5a1O88207 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC21.15■□□□□ 0.98
Col5a1O88207 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col5a1O88207 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col5a1O88207 Cnep1r1-201ENSMUST00000095214 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Col5a1O88207 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
Col5a1O88207 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col5a1O88207 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Col5a1O88207 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
Col5a1O88207 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Col5a1O88207 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Col5a1O88207 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
Col5a1O88207 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
Col5a1O88207 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC21.13■□□□□ 0.97
Col5a1O88207 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC21.13■□□□□ 0.97
Col5a1O88207 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC21.13■□□□□ 0.97
Col5a1O88207 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC21.12■□□□□ 0.97
Col5a1O88207 AC153911.1-201ENSMUST00000220378 758 ntBASIC21.12■□□□□ 0.97
Col5a1O88207 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Col5a1O88207 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms