Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC11.58□□□□□ -0.55
USH2AO75445 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
USH2AO75445 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC11.58□□□□□ -0.56
USH2AO75445 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
USH2AO75445 SMPD5-203ENST00000639008 1464 ntBASIC11.58□□□□□ -0.56
USH2AO75445 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
USH2AO75445 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.56
USH2AO75445 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC11.57□□□□□ -0.56
USH2AO75445 AC110285.7-201ENST00000624417 1536 ntBASIC11.57□□□□□ -0.56
USH2AO75445 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
USH2AO75445 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
USH2AO75445 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC11.57□□□□□ -0.56
USH2AO75445 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
USH2AO75445 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
USH2AO75445 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
USH2AO75445 AL139246.5-201ENST00000606645 996 ntBASIC11.57□□□□□ -0.56
USH2AO75445 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
USH2AO75445 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
USH2AO75445 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
USH2AO75445 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
USH2AO75445 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
USH2AO75445 MIR219A2-201ENST00000608502 1504 ntBASIC11.56□□□□□ -0.56
USH2AO75445 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC11.56□□□□□ -0.56
USH2AO75445 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC11.56□□□□□ -0.56
USH2AO75445 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC11.56□□□□□ -0.56
USH2AO75445 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC11.55□□□□□ -0.56
USH2AO75445 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC11.55□□□□□ -0.56
USH2AO75445 WHAMMP2-203ENST00000563942 1603 ntBASIC11.55□□□□□ -0.56
USH2AO75445 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC11.55□□□□□ -0.56
USH2AO75445 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC11.55□□□□□ -0.56
USH2AO75445 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC11.55□□□□□ -0.56
USH2AO75445 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
USH2AO75445 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC11.55□□□□□ -0.56
USH2AO75445 PRTG-204ENST00000561292 833 ntTSL 3 BASIC11.55□□□□□ -0.56
USH2AO75445 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC11.55□□□□□ -0.56
USH2AO75445 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
USH2AO75445 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC11.54□□□□□ -0.56
USH2AO75445 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
USH2AO75445 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
USH2AO75445 RPS2-210ENST00000530225 765 ntTSL 2 BASIC11.54□□□□□ -0.56
USH2AO75445 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
USH2AO75445 AC239859.2-201ENST00000444165 318 ntBASIC11.53□□□□□ -0.56
USH2AO75445 MIR6765-201ENST00000614092 87 ntBASIC11.53□□□□□ -0.56
USH2AO75445 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
USH2AO75445 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
USH2AO75445 RAP2CP1-202ENST00000605179 643 ntBASIC11.53□□□□□ -0.56
USH2AO75445 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC11.53□□□□□ -0.56
USH2AO75445 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC11.53□□□□□ -0.56
USH2AO75445 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC11.53□□□□□ -0.56
USH2AO75445 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC11.53□□□□□ -0.56
USH2AO75445 AL031848.2-201ENST00000607670 837 ntBASIC11.52□□□□□ -0.56
USH2AO75445 PVT1_1.1-201ENST00000615125 194 ntBASIC11.52□□□□□ -0.57
USH2AO75445 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
USH2AO75445 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
USH2AO75445 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
USH2AO75445 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC11.52□□□□□ -0.57
USH2AO75445 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC11.52□□□□□ -0.57
USH2AO75445 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC11.52□□□□□ -0.57
USH2AO75445 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC11.52□□□□□ -0.57
USH2AO75445 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC11.51□□□□□ -0.57
USH2AO75445 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
USH2AO75445 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC11.51□□□□□ -0.57
USH2AO75445 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
USH2AO75445 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC11.51□□□□□ -0.57
USH2AO75445 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC11.51□□□□□ -0.57
USH2AO75445 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC11.51□□□□□ -0.57
USH2AO75445 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
USH2AO75445 Z92544.1-202ENST00000571933 1220 ntBASIC11.51□□□□□ -0.57
USH2AO75445 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC11.51□□□□□ -0.57
USH2AO75445 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC11.51□□□□□ -0.57
USH2AO75445 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC11.51□□□□□ -0.57
USH2AO75445 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC11.51□□□□□ -0.57
USH2AO75445 YBX1P4-201ENST00000392794 808 ntBASIC11.51□□□□□ -0.57
USH2AO75445 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC11.51□□□□□ -0.57
USH2AO75445 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC11.51□□□□□ -0.57
USH2AO75445 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC11.51□□□□□ -0.57
USH2AO75445 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC11.51□□□□□ -0.57
USH2AO75445 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC11.5□□□□□ -0.57
USH2AO75445 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC11.5□□□□□ -0.57
USH2AO75445 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
USH2AO75445 REST-210ENST00000638187 1334 ntTSL 5 BASIC11.5□□□□□ -0.57
USH2AO75445 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.57
USH2AO75445 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC11.5□□□□□ -0.57
USH2AO75445 GRAMD4P7-201ENST00000578182 1232 ntBASIC11.5□□□□□ -0.57
USH2AO75445 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC11.49□□□□□ -0.57
USH2AO75445 AC074183.2-201ENST00000623112 922 ntBASIC11.49□□□□□ -0.57
USH2AO75445 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
USH2AO75445 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC11.49□□□□□ -0.57
USH2AO75445 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC11.49□□□□□ -0.57
USH2AO75445 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC11.49□□□□□ -0.57
USH2AO75445 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.57
USH2AO75445 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC11.49□□□□□ -0.57
USH2AO75445 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC11.49□□□□□ -0.57
USH2AO75445 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC11.49□□□□□ -0.57
USH2AO75445 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC11.49□□□□□ -0.57
USH2AO75445 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
USH2AO75445 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC11.48□□□□□ -0.57
USH2AO75445 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC11.48□□□□□ -0.57
USH2AO75445 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC11.48□□□□□ -0.57
USH2AO75445 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC11.48□□□□□ -0.57
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms