Protein–RNA interactions for Protein: O00479

HMGN4, High mobility group nucleosome-binding domain-containing protein 4, humanhuman

Predictions only

Length 90 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4O00479 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC23.46■■□□□ 1.35
HMGN4O00479 AC021231.2-201ENST00000594613 730 ntBASIC23.46■■□□□ 1.35
HMGN4O00479 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC23.46■■□□□ 1.35
HMGN4O00479 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
HMGN4O00479 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
HMGN4O00479 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC23.45■■□□□ 1.35
HMGN4O00479 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
HMGN4O00479 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
HMGN4O00479 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
HMGN4O00479 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
HMGN4O00479 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
HMGN4O00479 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
HMGN4O00479 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC23.43■■□□□ 1.34
HMGN4O00479 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC23.43■■□□□ 1.34
HMGN4O00479 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC23.43■■□□□ 1.34
HMGN4O00479 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC23.43■■□□□ 1.34
HMGN4O00479 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC23.43■■□□□ 1.34
HMGN4O00479 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC23.43■■□□□ 1.34
HMGN4O00479 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC23.42■■□□□ 1.34
HMGN4O00479 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC23.42■■□□□ 1.34
HMGN4O00479 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC23.41■■□□□ 1.34
HMGN4O00479 DUX4L29-201ENST00000425409 679 ntBASIC23.41■■□□□ 1.34
HMGN4O00479 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC23.41■■□□□ 1.34
HMGN4O00479 AC110285.7-201ENST00000624417 1536 ntBASIC23.41■■□□□ 1.34
HMGN4O00479 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC23.41■■□□□ 1.34
HMGN4O00479 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC23.4■■□□□ 1.34
HMGN4O00479 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC23.4■■□□□ 1.34
HMGN4O00479 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC23.39■■□□□ 1.34
HMGN4O00479 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC23.39■■□□□ 1.33
HMGN4O00479 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
HMGN4O00479 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC23.38■■□□□ 1.33
HMGN4O00479 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
HMGN4O00479 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
HMGN4O00479 PEX7-203ENST00000541292 945 ntTSL 5 BASIC23.38■■□□□ 1.33
HMGN4O00479 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC23.38■■□□□ 1.33
HMGN4O00479 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC23.38■■□□□ 1.33
HMGN4O00479 CREM-210ENST00000374721 2020 ntTSL 5 BASIC23.38■■□□□ 1.33
HMGN4O00479 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
HMGN4O00479 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
HMGN4O00479 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
HMGN4O00479 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC23.37■■□□□ 1.33
HMGN4O00479 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC23.37■■□□□ 1.33
HMGN4O00479 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
HMGN4O00479 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC23.36■■□□□ 1.33
HMGN4O00479 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC23.36■■□□□ 1.33
HMGN4O00479 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
HMGN4O00479 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC23.35■■□□□ 1.33
HMGN4O00479 RPS2P35-201ENST00000443417 897 ntBASIC23.35■■□□□ 1.33
HMGN4O00479 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC23.35■■□□□ 1.33
HMGN4O00479 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC23.35■■□□□ 1.33
HMGN4O00479 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC23.35■■□□□ 1.33
HMGN4O00479 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
HMGN4O00479 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.34■■□□□ 1.33
HMGN4O00479 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC23.34■■□□□ 1.33
HMGN4O00479 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
HMGN4O00479 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
HMGN4O00479 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
HMGN4O00479 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC23.33■■□□□ 1.33
HMGN4O00479 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
HMGN4O00479 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC23.33■■□□□ 1.33
HMGN4O00479 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC23.33■■□□□ 1.32
HMGN4O00479 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.32
HMGN4O00479 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.32
HMGN4O00479 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC23.32■■□□□ 1.32
HMGN4O00479 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC23.32■■□□□ 1.32
HMGN4O00479 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
HMGN4O00479 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC23.31■■□□□ 1.32
HMGN4O00479 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC23.31■■□□□ 1.32
HMGN4O00479 CAPNS1-215ENST00000628018 1509 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
HMGN4O00479 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC23.29■■□□□ 1.32
HMGN4O00479 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC23.29■■□□□ 1.32
HMGN4O00479 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.29■■□□□ 1.32
HMGN4O00479 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
HMGN4O00479 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.29■■□□□ 1.32
HMGN4O00479 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC23.28■■□□□ 1.32
HMGN4O00479 RHBDD2-202ENST00000318622 1878 ntTSL 2 BASIC23.28■■□□□ 1.32
HMGN4O00479 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
HMGN4O00479 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
HMGN4O00479 HGH1-207ENST00000628266 258 ntTSL 5 BASIC23.28■■□□□ 1.32
HMGN4O00479 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC23.28■■□□□ 1.32
HMGN4O00479 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
HMGN4O00479 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
HMGN4O00479 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
HMGN4O00479 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC23.27■■□□□ 1.32
HMGN4O00479 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
HMGN4O00479 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
HMGN4O00479 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
HMGN4O00479 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC23.26■■□□□ 1.31
HMGN4O00479 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC23.26■■□□□ 1.31
HMGN4O00479 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC23.26■■□□□ 1.31
HMGN4O00479 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC23.26■■□□□ 1.31
HMGN4O00479 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
HMGN4O00479 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
HMGN4O00479 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
HMGN4O00479 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
HMGN4O00479 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
HMGN4O00479 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC23.25■■□□□ 1.31
HMGN4O00479 AL449106.1-201ENST00000608517 1980 ntBASIC23.25■■□□□ 1.31
HMGN4O00479 SHF-207ENST00000560540 2062 ntTSL 5 BASIC23.24■■□□□ 1.31
HMGN4O00479 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms