Protein–RNA interactions for Protein: D3Z4R1

Hfm1, Probable ATP-dependent DNA helicase HFM1, mousemouse

Predictions only

Length 1,434 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hfm1D3Z4R1 Dtnb-211ENSMUST00000173240 2218 ntTSL 5 BASIC33.63■■■□□ 2.97
Hfm1D3Z4R1 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC33.63■■■□□ 2.97
Hfm1D3Z4R1 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC33.62■■■□□ 2.97
Hfm1D3Z4R1 Gm7276-201ENSMUST00000097520 1252 ntAPPRIS P1 BASIC33.62■■■□□ 2.97
Hfm1D3Z4R1 Traf4-201ENSMUST00000017530 2078 ntAPPRIS P1 TSL 1 (best) BASIC33.61■■■□□ 2.97
Hfm1D3Z4R1 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC33.61■■■□□ 2.97
Hfm1D3Z4R1 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC33.61■■■□□ 2.97
Hfm1D3Z4R1 Plpp2-204ENSMUST00000166804 1566 ntAPPRIS ALT2 TSL 1 (best) BASIC33.6■■■□□ 2.97
Hfm1D3Z4R1 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC33.59■■■□□ 2.97
Hfm1D3Z4R1 Gm15546-201ENSMUST00000122095 826 ntBASIC33.59■■■□□ 2.97
Hfm1D3Z4R1 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC33.58■■■□□ 2.97
Hfm1D3Z4R1 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC33.57■■■□□ 2.96
Hfm1D3Z4R1 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC33.56■■■□□ 2.96
Hfm1D3Z4R1 Terc-201ENSMUST00000082862 423 ntBASIC33.55■■■□□ 2.96
Hfm1D3Z4R1 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC33.54■■■□□ 2.96
Hfm1D3Z4R1 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC33.54■■■□□ 2.96
Hfm1D3Z4R1 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC33.54■■■□□ 2.96
Hfm1D3Z4R1 Gm5522-201ENSMUST00000189483 1242 ntBASIC33.53■■■□□ 2.96
Hfm1D3Z4R1 Slc35a2-211ENSMUST00000208640 486 ntTSL 5 BASIC33.53■■■□□ 2.96
Hfm1D3Z4R1 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC33.52■■■□□ 2.96
Hfm1D3Z4R1 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC33.52■■■□□ 2.96
Hfm1D3Z4R1 H1fx-201ENSMUST00000056403 1217 ntAPPRIS P1 BASIC33.52■■■□□ 2.96
Hfm1D3Z4R1 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC33.51■■■□□ 2.96
Hfm1D3Z4R1 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC33.5■■■□□ 2.95
Hfm1D3Z4R1 Gm14121-201ENSMUST00000121441 1380 ntBASIC33.49■■■□□ 2.95
Hfm1D3Z4R1 4930597O21Rik-201ENSMUST00000065878 984 ntTSL 1 (best) BASIC33.49■■■□□ 2.95
Hfm1D3Z4R1 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC33.48■■■□□ 2.95
Hfm1D3Z4R1 Ube2j2-202ENSMUST00000103175 1309 ntAPPRIS P1 TSL 1 (best) BASIC33.47■■■□□ 2.95
Hfm1D3Z4R1 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC33.47■■■□□ 2.95
Hfm1D3Z4R1 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
Hfm1D3Z4R1 Galr3-201ENSMUST00000058004 1245 ntAPPRIS P1 TSL 1 (best) BASIC33.46■■■□□ 2.95
Hfm1D3Z4R1 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC33.45■■■□□ 2.95
Hfm1D3Z4R1 Casd1-204ENSMUST00000181734 1063 ntTSL 5 BASIC33.45■■■□□ 2.94
Hfm1D3Z4R1 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC33.44■■■□□ 2.94
Hfm1D3Z4R1 Spryd7-202ENSMUST00000100496 1459 ntTSL 1 (best) BASIC33.43■■■□□ 2.94
Hfm1D3Z4R1 Slc16a6-203ENSMUST00000070872 2354 ntAPPRIS ALT2 TSL 1 (best) BASIC33.43■■■□□ 2.94
Hfm1D3Z4R1 Dexi-201ENSMUST00000038281 1389 ntAPPRIS P1 TSL 1 (best) BASIC33.42■■■□□ 2.94
Hfm1D3Z4R1 A830010M20Rik-207ENSMUST00000162298 1408 ntTSL 5 BASIC33.42■■■□□ 2.94
Hfm1D3Z4R1 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC33.41■■■□□ 2.94
Hfm1D3Z4R1 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC33.41■■■□□ 2.94
Hfm1D3Z4R1 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC33.41■■■□□ 2.94
Hfm1D3Z4R1 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
Hfm1D3Z4R1 Ethe1-201ENSMUST00000077191 1484 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
Hfm1D3Z4R1 Fads2-201ENSMUST00000025567 1508 ntAPPRIS P1 TSL 1 (best) BASIC33.39■■■□□ 2.94
Hfm1D3Z4R1 Ube2k-203ENSMUST00000201266 1449 ntTSL 5 BASIC33.38■■■□□ 2.93
Hfm1D3Z4R1 Snx21-203ENSMUST00000152471 1243 ntTSL 1 (best) BASIC33.38■■■□□ 2.93
Hfm1D3Z4R1 Becn1-216ENSMUST00000170502 725 ntTSL 1 (best) BASIC33.38■■■□□ 2.93
Hfm1D3Z4R1 Hnrnpa0-201ENSMUST00000007980 2678 ntAPPRIS P1 BASIC33.38■■■□□ 2.93
Hfm1D3Z4R1 Htatsf1-202ENSMUST00000114751 1128 ntTSL 1 (best) BASIC33.37■■■□□ 2.93
Hfm1D3Z4R1 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC33.37■■■□□ 2.93
Hfm1D3Z4R1 Sarnp-203ENSMUST00000219512 953 ntTSL 3 BASIC33.37■■■□□ 2.93
Hfm1D3Z4R1 Eid1-201ENSMUST00000164756 1691 ntAPPRIS P1 BASIC33.37■■■□□ 2.93
Hfm1D3Z4R1 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC33.37■■■□□ 2.93
Hfm1D3Z4R1 AC164424.2-201ENSMUST00000223281 725 ntTSL 3 BASIC33.36■■■□□ 2.93
Hfm1D3Z4R1 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC33.36■■■□□ 2.93
Hfm1D3Z4R1 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC33.36■■■□□ 2.93
Hfm1D3Z4R1 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC33.36■■■□□ 2.93
Hfm1D3Z4R1 Rin3-207ENSMUST00000150795 937 ntTSL 1 (best) BASIC33.35■■■□□ 2.93
Hfm1D3Z4R1 Lsm4-205ENSMUST00000210987 636 ntTSL 5 BASIC33.35■■■□□ 2.93
Hfm1D3Z4R1 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC33.34■■■□□ 2.93
Hfm1D3Z4R1 Zc3h6-201ENSMUST00000110319 1484 ntTSL 1 (best) BASIC33.34■■■□□ 2.93
Hfm1D3Z4R1 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
Hfm1D3Z4R1 Nudt3-203ENSMUST00000114886 996 ntTSL 2 BASIC33.34■■■□□ 2.93
Hfm1D3Z4R1 AC161180.1-201ENSMUST00000223439 933 ntAPPRIS P1 BASIC33.34■■■□□ 2.93
Hfm1D3Z4R1 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC33.34■■■□□ 2.93
Hfm1D3Z4R1 AC166358.2-201ENSMUST00000223403 734 ntTSL 5 BASIC33.33■■■□□ 2.93
Hfm1D3Z4R1 Gm26533-201ENSMUST00000180550 1790 ntTSL 1 (best) BASIC33.32■■■□□ 2.93
Hfm1D3Z4R1 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC33.32■■■□□ 2.92
Hfm1D3Z4R1 Ankrd49-205ENSMUST00000216037 1037 ntAPPRIS P1 TSL 2 BASIC33.32■■■□□ 2.92
Hfm1D3Z4R1 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC33.32■■■□□ 2.92
Hfm1D3Z4R1 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC33.31■■■□□ 2.92
Hfm1D3Z4R1 Hnrnpul1-202ENSMUST00000108401 1240 ntTSL 1 (best) BASIC33.31■■■□□ 2.92
Hfm1D3Z4R1 Gm20458-201ENSMUST00000164863 1369 ntAPPRIS P1 TSL 5 BASIC33.31■■■□□ 2.92
Hfm1D3Z4R1 Gm20532-201ENSMUST00000174066 780 ntAPPRIS P1 TSL 5 BASIC33.31■■■□□ 2.92
Hfm1D3Z4R1 Ppp1ca-201ENSMUST00000046094 1379 ntAPPRIS P1 TSL 1 (best) BASIC33.31■■■□□ 2.92
Hfm1D3Z4R1 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC33.3■■■□□ 2.92
Hfm1D3Z4R1 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC33.3■■■□□ 2.92
Hfm1D3Z4R1 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
Hfm1D3Z4R1 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC33.3■■■□□ 2.92
Hfm1D3Z4R1 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC33.29■■■□□ 2.92
Hfm1D3Z4R1 Foxe3-201ENSMUST00000050940 867 ntAPPRIS P1 BASIC33.29■■■□□ 2.92
Hfm1D3Z4R1 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC33.29■■■□□ 2.92
Hfm1D3Z4R1 Cadm1-206ENSMUST00000143026 1643 ntTSL 5 BASIC33.28■■■□□ 2.92
Hfm1D3Z4R1 Ywhaz-204ENSMUST00000110362 2122 ntAPPRIS P1 TSL 1 (best) BASIC33.27■■■□□ 2.92
Hfm1D3Z4R1 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC33.27■■■□□ 2.92
Hfm1D3Z4R1 Hoxb3-201ENSMUST00000055334 1890 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.92
Hfm1D3Z4R1 Gm13238-201ENSMUST00000117655 780 ntBASIC33.26■■■□□ 2.91
Hfm1D3Z4R1 Gm43566-201ENSMUST00000196851 808 ntBASIC33.26■■■□□ 2.91
Hfm1D3Z4R1 D17Wsu92e-201ENSMUST00000075076 1470 ntTSL 1 (best) BASIC33.26■■■□□ 2.91
Hfm1D3Z4R1 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.91
Hfm1D3Z4R1 Gm16286-202ENSMUST00000125127 1683 ntAPPRIS P1 TSL 1 (best) BASIC33.26■■■□□ 2.91
Hfm1D3Z4R1 Gm44428-201ENSMUST00000204474 874 ntBASIC33.25■■■□□ 2.91
Hfm1D3Z4R1 Gm6217-201ENSMUST00000222182 829 ntAPPRIS P1 BASIC33.25■■■□□ 2.91
Hfm1D3Z4R1 Mapkap1-202ENSMUST00000113124 1758 ntAPPRIS ALT1 TSL 5 BASIC33.25■■■□□ 2.91
Hfm1D3Z4R1 AC093043.1-201ENSMUST00000226700 898 ntBASIC33.24■■■□□ 2.91
Hfm1D3Z4R1 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC33.23■■■□□ 2.91
Hfm1D3Z4R1 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC33.23■■■□□ 2.91
Hfm1D3Z4R1 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC33.23■■■□□ 2.91
Hfm1D3Z4R1 Kctd6-201ENSMUST00000022272 1650 ntAPPRIS P1 TSL 1 (best) BASIC33.22■■■□□ 2.91
Hfm1D3Z4R1 Gng12-203ENSMUST00000114224 680 ntAPPRIS P1 TSL 3 BASIC33.21■■■□□ 2.91
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms