Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC23.12■■□□□ 1.29
CPSF4LA6NMK7 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
CPSF4LA6NMK7 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
CPSF4LA6NMK7 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
CPSF4LA6NMK7 CALM3-209ENST00000597743 577 ntTSL 4 BASIC23.12■■□□□ 1.29
CPSF4LA6NMK7 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC23.11■■□□□ 1.29
CPSF4LA6NMK7 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC23.11■■□□□ 1.29
CPSF4LA6NMK7 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
CPSF4LA6NMK7 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC23.11■■□□□ 1.29
CPSF4LA6NMK7 CREM-210ENST00000374721 2020 ntTSL 5 BASIC23.1■■□□□ 1.29
CPSF4LA6NMK7 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC23.1■■□□□ 1.29
CPSF4LA6NMK7 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC23.1■■□□□ 1.29
CPSF4LA6NMK7 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC23.1■■□□□ 1.29
CPSF4LA6NMK7 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC23.1■■□□□ 1.29
CPSF4LA6NMK7 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
CPSF4LA6NMK7 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CPSF4LA6NMK7 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
CPSF4LA6NMK7 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
CPSF4LA6NMK7 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
CPSF4LA6NMK7 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CPSF4LA6NMK7 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
CPSF4LA6NMK7 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.29
CPSF4LA6NMK7 AC044849.2-201ENST00000606596 710 ntBASIC23.08■■□□□ 1.29
CPSF4LA6NMK7 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
CPSF4LA6NMK7 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
CPSF4LA6NMK7 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
CPSF4LA6NMK7 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
CPSF4LA6NMK7 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC23.07■■□□□ 1.28
CPSF4LA6NMK7 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC23.07■■□□□ 1.28
CPSF4LA6NMK7 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC23.07■■□□□ 1.28
CPSF4LA6NMK7 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
CPSF4LA6NMK7 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CPSF4LA6NMK7 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
CPSF4LA6NMK7 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC23.06■■□□□ 1.28
CPSF4LA6NMK7 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC23.06■■□□□ 1.28
CPSF4LA6NMK7 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
CPSF4LA6NMK7 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC23.06■■□□□ 1.28
CPSF4LA6NMK7 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CPSF4LA6NMK7 AC004837.3-201ENST00000420748 565 ntTSL 4 BASIC23.05■■□□□ 1.28
CPSF4LA6NMK7 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CPSF4LA6NMK7 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CPSF4LA6NMK7 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC23.04■■□□□ 1.28
CPSF4LA6NMK7 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
CPSF4LA6NMK7 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
CPSF4LA6NMK7 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
CPSF4LA6NMK7 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC23.03■■□□□ 1.28
CPSF4LA6NMK7 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
CPSF4LA6NMK7 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CPSF4LA6NMK7 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
CPSF4LA6NMK7 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CPSF4LA6NMK7 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
CPSF4LA6NMK7 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CPSF4LA6NMK7 BOD1-206ENST00000480951 814 ntTSL 2 BASIC23.01■■□□□ 1.27
CPSF4LA6NMK7 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC23.01■■□□□ 1.27
CPSF4LA6NMK7 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC23.01■■□□□ 1.27
CPSF4LA6NMK7 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
CPSF4LA6NMK7 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC23.01■■□□□ 1.27
CPSF4LA6NMK7 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC23■■□□□ 1.27
CPSF4LA6NMK7 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
CPSF4LA6NMK7 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC23■■□□□ 1.27
CPSF4LA6NMK7 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC23■■□□□ 1.27
CPSF4LA6NMK7 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC23■■□□□ 1.27
CPSF4LA6NMK7 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CPSF4LA6NMK7 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CPSF4LA6NMK7 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
CPSF4LA6NMK7 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC22.99■■□□□ 1.27
CPSF4LA6NMK7 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
CPSF4LA6NMK7 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC22.98■■□□□ 1.27
CPSF4LA6NMK7 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC22.98■■□□□ 1.27
CPSF4LA6NMK7 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC22.98■■□□□ 1.27
CPSF4LA6NMK7 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC22.97■■□□□ 1.27
CPSF4LA6NMK7 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC22.97■■□□□ 1.27
CPSF4LA6NMK7 SHF-207ENST00000560540 2062 ntTSL 5 BASIC22.97■■□□□ 1.27
CPSF4LA6NMK7 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC22.97■■□□□ 1.27
CPSF4LA6NMK7 AC110285.7-201ENST00000624417 1536 ntBASIC22.96■■□□□ 1.27
CPSF4LA6NMK7 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
CPSF4LA6NMK7 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
CPSF4LA6NMK7 AC021231.2-201ENST00000594613 730 ntBASIC22.95■■□□□ 1.26
CPSF4LA6NMK7 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
CPSF4LA6NMK7 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC22.94■■□□□ 1.26
CPSF4LA6NMK7 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC22.94■■□□□ 1.26
CPSF4LA6NMK7 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
CPSF4LA6NMK7 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
CPSF4LA6NMK7 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
CPSF4LA6NMK7 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC22.94■■□□□ 1.26
CPSF4LA6NMK7 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CPSF4LA6NMK7 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC22.93■■□□□ 1.26
CPSF4LA6NMK7 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC22.93■■□□□ 1.26
CPSF4LA6NMK7 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC22.93■■□□□ 1.26
CPSF4LA6NMK7 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC22.93■■□□□ 1.26
CPSF4LA6NMK7 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
CPSF4LA6NMK7 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC22.92■■□□□ 1.26
CPSF4LA6NMK7 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC22.92■■□□□ 1.26
CPSF4LA6NMK7 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC22.92■■□□□ 1.26
CPSF4LA6NMK7 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC22.92■■□□□ 1.26
CPSF4LA6NMK7 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC22.92■■□□□ 1.26
CPSF4LA6NMK7 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
CPSF4LA6NMK7 DUX4L29-201ENST00000425409 679 ntBASIC22.91■■□□□ 1.26
CPSF4LA6NMK7 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC22.91■■□□□ 1.26
CPSF4LA6NMK7 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC22.91■■□□□ 1.26
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms