Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC29.18■■■□□ 2.26
SMCHD1A6NHR9 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
SMCHD1A6NHR9 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC29.17■■■□□ 2.26
SMCHD1A6NHR9 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC29.17■■■□□ 2.26
SMCHD1A6NHR9 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
SMCHD1A6NHR9 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC29.16■■■□□ 2.26
SMCHD1A6NHR9 HES4-202ENST00000428771 1040 ntTSL 2 BASIC29.16■■■□□ 2.26
SMCHD1A6NHR9 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
SMCHD1A6NHR9 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
SMCHD1A6NHR9 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC29.16■■■□□ 2.26
SMCHD1A6NHR9 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC29.15■■■□□ 2.26
SMCHD1A6NHR9 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
SMCHD1A6NHR9 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC29.15■■■□□ 2.26
SMCHD1A6NHR9 AC012354.3-201ENST00000623734 483 ntBASIC29.15■■■□□ 2.26
SMCHD1A6NHR9 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC29.15■■■□□ 2.26
SMCHD1A6NHR9 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC29.14■■■□□ 2.26
SMCHD1A6NHR9 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC29.14■■■□□ 2.25
SMCHD1A6NHR9 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC29.13■■■□□ 2.25
SMCHD1A6NHR9 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC29.13■■■□□ 2.25
SMCHD1A6NHR9 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC29.13■■■□□ 2.25
SMCHD1A6NHR9 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC29.13■■■□□ 2.25
SMCHD1A6NHR9 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC29.13■■■□□ 2.25
SMCHD1A6NHR9 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC29.13■■■□□ 2.25
SMCHD1A6NHR9 MED25-210ENST00000612854 801 ntTSL 5 BASIC29.13■■■□□ 2.25
SMCHD1A6NHR9 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC29.13■■■□□ 2.25
SMCHD1A6NHR9 MED25-214ENST00000622402 642 ntTSL 5 BASIC29.13■■■□□ 2.25
SMCHD1A6NHR9 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC29.13■■■□□ 2.25
SMCHD1A6NHR9 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
SMCHD1A6NHR9 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC29.12■■■□□ 2.25
SMCHD1A6NHR9 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC29.12■■■□□ 2.25
SMCHD1A6NHR9 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC29.12■■■□□ 2.25
SMCHD1A6NHR9 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC29.12■■■□□ 2.25
SMCHD1A6NHR9 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC29.12■■■□□ 2.25
SMCHD1A6NHR9 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC29.11■■■□□ 2.25
SMCHD1A6NHR9 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC29.11■■■□□ 2.25
SMCHD1A6NHR9 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC29.11■■■□□ 2.25
SMCHD1A6NHR9 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC29.11■■■□□ 2.25
SMCHD1A6NHR9 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC29.1■■■□□ 2.25
SMCHD1A6NHR9 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC29.1■■■□□ 2.25
SMCHD1A6NHR9 AC092296.2-201ENST00000589470 999 ntBASIC29.1■■■□□ 2.25
SMCHD1A6NHR9 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC29.09■■■□□ 2.25
SMCHD1A6NHR9 AC139426.1-201ENST00000568218 2529 ntBASIC29.09■■■□□ 2.25
SMCHD1A6NHR9 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC29.09■■■□□ 2.25
SMCHD1A6NHR9 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC29.08■■■□□ 2.25
SMCHD1A6NHR9 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC29.08■■■□□ 2.25
SMCHD1A6NHR9 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC29.08■■■□□ 2.25
SMCHD1A6NHR9 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
SMCHD1A6NHR9 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
SMCHD1A6NHR9 SYT12-205ENST00000527043 1661 ntAPPRIS P1 TSL 1 (best) BASIC29.07■■■□□ 2.24
SMCHD1A6NHR9 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC29.06■■■□□ 2.24
SMCHD1A6NHR9 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC29.06■■■□□ 2.24
SMCHD1A6NHR9 MOB2-207ENST00000614710 705 ntTSL 5 BASIC29.06■■■□□ 2.24
SMCHD1A6NHR9 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC29.06■■■□□ 2.24
SMCHD1A6NHR9 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC29.05■■■□□ 2.24
SMCHD1A6NHR9 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC29.05■■■□□ 2.24
SMCHD1A6NHR9 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC29.05■■■□□ 2.24
SMCHD1A6NHR9 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC29.04■■■□□ 2.24
SMCHD1A6NHR9 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC29.04■■■□□ 2.24
SMCHD1A6NHR9 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC29.03■■■□□ 2.24
SMCHD1A6NHR9 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC29.03■■■□□ 2.24
SMCHD1A6NHR9 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC29.03■■■□□ 2.24
SMCHD1A6NHR9 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC29.02■■■□□ 2.24
SMCHD1A6NHR9 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC29.01■■■□□ 2.23
SMCHD1A6NHR9 HYI-213ENST00000583037 1322 ntTSL 5 BASIC29■■■□□ 2.23
SMCHD1A6NHR9 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC29■■■□□ 2.23
SMCHD1A6NHR9 AL157400.5-201ENST00000507624 621 ntBASIC29■■■□□ 2.23
SMCHD1A6NHR9 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC29■■■□□ 2.23
SMCHD1A6NHR9 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC29■■■□□ 2.23
SMCHD1A6NHR9 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC29■■■□□ 2.23
SMCHD1A6NHR9 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC29■■■□□ 2.23
SMCHD1A6NHR9 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC28.99■■■□□ 2.23
SMCHD1A6NHR9 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
SMCHD1A6NHR9 TMEM187-201ENST00000369982 1880 ntAPPRIS P1 TSL 1 (best) BASIC28.98■■■□□ 2.23
SMCHD1A6NHR9 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC28.98■■■□□ 2.23
SMCHD1A6NHR9 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC28.98■■■□□ 2.23
SMCHD1A6NHR9 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC28.97■■■□□ 2.23
SMCHD1A6NHR9 GSR-206ENST00000546342 1482 ntAPPRIS ALT2 TSL 1 (best) BASIC28.97■■■□□ 2.23
SMCHD1A6NHR9 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC28.97■■■□□ 2.23
SMCHD1A6NHR9 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC28.97■■■□□ 2.23
SMCHD1A6NHR9 AP002414.2-202ENST00000590929 1450 ntBASIC28.97■■■□□ 2.23
SMCHD1A6NHR9 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC28.96■■■□□ 2.23
SMCHD1A6NHR9 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC28.96■■■□□ 2.23
SMCHD1A6NHR9 AL033527.3-201ENST00000566366 1196 ntBASIC28.96■■■□□ 2.23
SMCHD1A6NHR9 KRT18P60-201ENST00000312876 1297 ntBASIC28.95■■■□□ 2.23
SMCHD1A6NHR9 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC28.95■■■□□ 2.23
SMCHD1A6NHR9 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC28.95■■■□□ 2.22
SMCHD1A6NHR9 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC28.94■■■□□ 2.22
SMCHD1A6NHR9 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
SMCHD1A6NHR9 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC28.94■■■□□ 2.22
SMCHD1A6NHR9 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC28.94■■■□□ 2.22
SMCHD1A6NHR9 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC28.94■■■□□ 2.22
SMCHD1A6NHR9 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC28.93■■■□□ 2.22
SMCHD1A6NHR9 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC28.93■■■□□ 2.22
SMCHD1A6NHR9 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC28.93■■■□□ 2.22
SMCHD1A6NHR9 ARPC2-201ENST00000295685 1605 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
SMCHD1A6NHR9 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC28.92■■■□□ 2.22
SMCHD1A6NHR9 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
SMCHD1A6NHR9 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC28.92■■■□□ 2.22
SMCHD1A6NHR9 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC28.91■■■□□ 2.22
SMCHD1A6NHR9 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC28.91■■■□□ 2.22
Retrieved 100 of 98,524 protein–RNA pairs in 147.4 ms