Protein–RNA interactions for Protein: A0A0B4J1H3

Trbv16, T cell receptor beta, variable 16 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv16A0A0B4J1H3 Lrrc75a-201ENSMUST00000057194 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trbv16A0A0B4J1H3 Gm14121-201ENSMUST00000121441 1380 ntBASIC16.62■□□□□ 0.25
Trbv16A0A0B4J1H3 Smarcc1-201ENSMUST00000088716 5717 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trbv16A0A0B4J1H3 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Trbv16A0A0B4J1H3 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trbv16A0A0B4J1H3 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Trbv16A0A0B4J1H3 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trbv16A0A0B4J1H3 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Trbv16A0A0B4J1H3 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Trbv16A0A0B4J1H3 Fam168b-203ENSMUST00000167518 5058 ntTSL 5 BASIC16.6■□□□□ 0.25
Trbv16A0A0B4J1H3 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
Trbv16A0A0B4J1H3 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trbv16A0A0B4J1H3 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trbv16A0A0B4J1H3 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Trbv16A0A0B4J1H3 Dnajc21-201ENSMUST00000136591 2060 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Trbv16A0A0B4J1H3 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC16.6■□□□□ 0.25
Trbv16A0A0B4J1H3 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trbv16A0A0B4J1H3 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trbv16A0A0B4J1H3 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Trbv16A0A0B4J1H3 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trbv16A0A0B4J1H3 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
Trbv16A0A0B4J1H3 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC16.57■□□□□ 0.24
Trbv16A0A0B4J1H3 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trbv16A0A0B4J1H3 Kat2b-201ENSMUST00000000724 4653 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
Trbv16A0A0B4J1H3 Glrx3-201ENSMUST00000064404 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trbv16A0A0B4J1H3 Neurl4-211ENSMUST00000177138 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trbv16A0A0B4J1H3 Rnf149-201ENSMUST00000062525 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trbv16A0A0B4J1H3 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Trbv16A0A0B4J1H3 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Trbv16A0A0B4J1H3 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC16.56■□□□□ 0.24
Trbv16A0A0B4J1H3 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
Trbv16A0A0B4J1H3 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC16.56■□□□□ 0.24
Trbv16A0A0B4J1H3 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
Trbv16A0A0B4J1H3 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
Trbv16A0A0B4J1H3 Gipc1-201ENSMUST00000019577 1522 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trbv16A0A0B4J1H3 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trbv16A0A0B4J1H3 Rasgef1c-203ENSMUST00000093142 2216 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
Trbv16A0A0B4J1H3 Gm4419-202ENSMUST00000226239 1431 ntBASIC16.54■□□□□ 0.24
Trbv16A0A0B4J1H3 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trbv16A0A0B4J1H3 Ski-201ENSMUST00000030917 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trbv16A0A0B4J1H3 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Trbv16A0A0B4J1H3 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
Trbv16A0A0B4J1H3 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC16.53■□□□□ 0.24
Trbv16A0A0B4J1H3 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trbv16A0A0B4J1H3 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
Trbv16A0A0B4J1H3 Usp48-205ENSMUST00000105840 5741 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
Trbv16A0A0B4J1H3 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
Trbv16A0A0B4J1H3 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trbv16A0A0B4J1H3 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.24
Trbv16A0A0B4J1H3 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
Trbv16A0A0B4J1H3 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
Trbv16A0A0B4J1H3 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
Trbv16A0A0B4J1H3 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
Trbv16A0A0B4J1H3 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC16.52■□□□□ 0.23
Trbv16A0A0B4J1H3 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
Trbv16A0A0B4J1H3 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trbv16A0A0B4J1H3 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
Trbv16A0A0B4J1H3 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trbv16A0A0B4J1H3 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC16.51■□□□□ 0.23
Trbv16A0A0B4J1H3 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trbv16A0A0B4J1H3 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
Trbv16A0A0B4J1H3 2310061I04Rik-202ENSMUST00000146451 2081 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
Trbv16A0A0B4J1H3 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC16.5■□□□□ 0.23
Trbv16A0A0B4J1H3 Gmeb1-202ENSMUST00000105964 1925 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trbv16A0A0B4J1H3 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trbv16A0A0B4J1H3 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
Trbv16A0A0B4J1H3 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trbv16A0A0B4J1H3 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trbv16A0A0B4J1H3 Arpc2-203ENSMUST00000113820 1439 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trbv16A0A0B4J1H3 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trbv16A0A0B4J1H3 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
Trbv16A0A0B4J1H3 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trbv16A0A0B4J1H3 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
Trbv16A0A0B4J1H3 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trbv16A0A0B4J1H3 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC16.48■□□□□ 0.23
Trbv16A0A0B4J1H3 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
Trbv16A0A0B4J1H3 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Trbv16A0A0B4J1H3 Ppp4r2-201ENSMUST00000063854 4874 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trbv16A0A0B4J1H3 Ppp4c-211ENSMUST00000206570 1400 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trbv16A0A0B4J1H3 Purg-202ENSMUST00000078058 1795 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
Trbv16A0A0B4J1H3 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC16.47■□□□□ 0.23
Trbv16A0A0B4J1H3 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
Trbv16A0A0B4J1H3 Hdac3-201ENSMUST00000043498 2004 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trbv16A0A0B4J1H3 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
Trbv16A0A0B4J1H3 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trbv16A0A0B4J1H3 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Trbv16A0A0B4J1H3 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC16.46■□□□□ 0.22
Trbv16A0A0B4J1H3 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Trbv16A0A0B4J1H3 Fbxw4-201ENSMUST00000046869 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Trbv16A0A0B4J1H3 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trbv16A0A0B4J1H3 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
Trbv16A0A0B4J1H3 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC16.45■□□□□ 0.22
Trbv16A0A0B4J1H3 Arl8a-201ENSMUST00000027684 1713 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trbv16A0A0B4J1H3 E330009J07Rik-201ENSMUST00000039008 1949 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Trbv16A0A0B4J1H3 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
Trbv16A0A0B4J1H3 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
Trbv16A0A0B4J1H3 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Trbv16A0A0B4J1H3 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Trbv16A0A0B4J1H3 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC16.44■□□□□ 0.22
Trbv16A0A0B4J1H3 Abhd17c-201ENSMUST00000117085 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 80.8 ms