Protein–RNA interactions for Protein: A0A075B5Z4

Trav1, T cell receptor alpha variable 1 (Fragment), mousemouse

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav1A0A075B5Z4 Coro1b-201ENSMUST00000008893 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Trav1A0A075B5Z4 Gm42699-201ENSMUST00000198104 1657 ntBASIC21.48■■□□□ 1.03
Trav1A0A075B5Z4 Gng12-204ENSMUST00000114225 1876 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
Trav1A0A075B5Z4 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Trav1A0A075B5Z4 Jmjd6-201ENSMUST00000047616 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Trav1A0A075B5Z4 Dbndd2-202ENSMUST00000069385 1658 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
Trav1A0A075B5Z4 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
Trav1A0A075B5Z4 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
Trav1A0A075B5Z4 Nrsn1-201ENSMUST00000057866 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Trav1A0A075B5Z4 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Trav1A0A075B5Z4 Wnt5b-203ENSMUST00000119369 2339 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Trav1A0A075B5Z4 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC21.44■■□□□ 1.02
Trav1A0A075B5Z4 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trav1A0A075B5Z4 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Trav1A0A075B5Z4 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trav1A0A075B5Z4 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trav1A0A075B5Z4 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trav1A0A075B5Z4 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trav1A0A075B5Z4 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
Trav1A0A075B5Z4 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trav1A0A075B5Z4 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC21.44■■□□□ 1.02
Trav1A0A075B5Z4 Tmem70-203ENSMUST00000177501 1636 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trav1A0A075B5Z4 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
Trav1A0A075B5Z4 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC21.43■■□□□ 1.02
Trav1A0A075B5Z4 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Trav1A0A075B5Z4 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC21.43■■□□□ 1.02
Trav1A0A075B5Z4 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Trav1A0A075B5Z4 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
Trav1A0A075B5Z4 Gm6821-201ENSMUST00000107540 542 ntBASIC21.41■■□□□ 1.02
Trav1A0A075B5Z4 Npas1-201ENSMUST00000002053 2091 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
Trav1A0A075B5Z4 Scn1b-201ENSMUST00000098548 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Trav1A0A075B5Z4 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Trav1A0A075B5Z4 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Trav1A0A075B5Z4 Nkx2-4-201ENSMUST00000067020 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Trav1A0A075B5Z4 Vmac-201ENSMUST00000067931 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
Trav1A0A075B5Z4 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Trav1A0A075B5Z4 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
Trav1A0A075B5Z4 Slc44a1-203ENSMUST00000107646 1974 ntTSL 5 BASIC21.39■■□□□ 1.01
Trav1A0A075B5Z4 Rnf39-201ENSMUST00000040498 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
Trav1A0A075B5Z4 Gorasp2-205ENSMUST00000133432 1941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
Trav1A0A075B5Z4 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC21.39■■□□□ 1.01
Trav1A0A075B5Z4 Fam220a-205ENSMUST00000169329 2331 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Trav1A0A075B5Z4 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Trav1A0A075B5Z4 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trav1A0A075B5Z4 Acvr2b-201ENSMUST00000035093 1729 ntTSL 5 BASIC21.37■■□□□ 1.01
Trav1A0A075B5Z4 Scrt2-201ENSMUST00000064061 3395 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
Trav1A0A075B5Z4 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Trav1A0A075B5Z4 Mppe1-201ENSMUST00000073054 2007 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Trav1A0A075B5Z4 Agap3-201ENSMUST00000024123 3207 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Trav1A0A075B5Z4 Evl-201ENSMUST00000021689 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Trav1A0A075B5Z4 Kctd2-201ENSMUST00000103035 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Trav1A0A075B5Z4 Ccdc142-201ENSMUST00000101254 2317 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Trav1A0A075B5Z4 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trav1A0A075B5Z4 Gm5784-202ENSMUST00000220896 2016 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Trav1A0A075B5Z4 Cacfd1-203ENSMUST00000114005 1286 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Trav1A0A075B5Z4 Sh3gl3-201ENSMUST00000032874 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trav1A0A075B5Z4 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trav1A0A075B5Z4 Tmem9b-201ENSMUST00000033333 1703 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Trav1A0A075B5Z4 Gm29254-202ENSMUST00000189302 883 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
Trav1A0A075B5Z4 A230020J21Rik-202ENSMUST00000192407 1649 ntTSL 2 BASIC21.33■■□□□ 1.01
Trav1A0A075B5Z4 Porcn-201ENSMUST00000077595 1872 ntAPPRIS P4 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trav1A0A075B5Z4 Porcn-204ENSMUST00000089403 1854 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Trav1A0A075B5Z4 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC21.33■■□□□ 1.01
Trav1A0A075B5Z4 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC21.33■■□□□ 1.01
Trav1A0A075B5Z4 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1
Trav1A0A075B5Z4 Stambp-207ENSMUST00000206592 2152 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Trav1A0A075B5Z4 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC21.32■■□□□ 1
Trav1A0A075B5Z4 Gm8503-201ENSMUST00000118131 455 ntBASIC21.32■■□□□ 1
Trav1A0A075B5Z4 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trav1A0A075B5Z4 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Trav1A0A075B5Z4 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC21.31■■□□□ 1
Trav1A0A075B5Z4 Srcap-210ENSMUST00000188124 2048 ntTSL 1 (best) BASIC21.31■■□□□ 1
Trav1A0A075B5Z4 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trav1A0A075B5Z4 Lpcat4-201ENSMUST00000028554 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trav1A0A075B5Z4 2410022M11Rik-201ENSMUST00000186474 1911 ntBASIC21.3■■□□□ 1
Trav1A0A075B5Z4 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Trav1A0A075B5Z4 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trav1A0A075B5Z4 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC21.3■■□□□ 1
Trav1A0A075B5Z4 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Trav1A0A075B5Z4 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trav1A0A075B5Z4 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trav1A0A075B5Z4 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trav1A0A075B5Z4 Cbln2-203ENSMUST00000122464 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Trav1A0A075B5Z4 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
Trav1A0A075B5Z4 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC21.27■■□□□ 1
Trav1A0A075B5Z4 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Trav1A0A075B5Z4 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Trav1A0A075B5Z4 Gng3-201ENSMUST00000096259 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Trav1A0A075B5Z4 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trav1A0A075B5Z4 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Trav1A0A075B5Z4 Bag2-201ENSMUST00000044691 1860 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trav1A0A075B5Z4 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC21.25■□□□□ 0.99
Trav1A0A075B5Z4 Nckap5los-201ENSMUST00000159738 1712 ntTSL 2 BASIC21.25■□□□□ 0.99
Trav1A0A075B5Z4 AC131739.1-201ENSMUST00000221692 1245 ntBASIC21.24■□□□□ 0.99
Trav1A0A075B5Z4 Dbp-201ENSMUST00000080885 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trav1A0A075B5Z4 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trav1A0A075B5Z4 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trav1A0A075B5Z4 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Trav1A0A075B5Z4 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trav1A0A075B5Z4 Anapc11-202ENSMUST00000093140 962 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 62.9 ms